Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6602672_6602781_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6602672 - 6602781

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATGTTTTCAAGT

Flanking Amino Acid:

CQEPYVLTSENRCVCPVSNA

Intron Amino Acid Position:

607

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.1

29.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

31.5

-2.1

3.4

38.4

40.9

Minor BPS

50.9

0.11

1.8

69.59

Associated Gene:

Gene:

EFEMP1

Ensembl Gene ID:

ENSAPLG00000001442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001836

6556824 - 6605540

48717