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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66028682_66030074_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66028682 - 66030074
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
KRPMQAPPGHDPDALKKSQG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
63.8
0.31
1
57.8
42.1
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000612
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000696
66023927 - 66032580
8654