About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6602978_6604874_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6602978 - 6604874
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGAATTAAAC
Flanking Amino Acid:
GNENGEFYLRQTSAVSAMLV
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
51.7
0.03
2
70.18
40.5

Associated Gene:

Gene:
EFEMP1
Ensembl Gene ID:
ENSAPLG00000001442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001836
6556824 - 6605540
48717