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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66030171_66030980_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66030171 - 66030980
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
ACTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAGTAACT
Flanking Amino Acid:
DHEGLGISITGGKEHGVPIL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
66.2
37.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.7
0.56
0.8
69.7
30.5
Minor 5ss
36.9
-1.5
3.4
55.6
42.7
Minor BPS
48.9
-0
2.4
80.09
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000612
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000696
66023927 - 66032580
8654