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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66050237_66051791_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66050237 - 66051791
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTTTATCA
Flanking Amino Acid:
SYGFSNAQKSGCWKQIKQPF
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.8
80.3
30.3
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
73.2
0.72
1.5
81.59
33.7

Associated Gene:

Gene:
DCBLD1
Ensembl Gene ID:
ENSAPLG00000001269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001345
66047052 - 66081503
34452