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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66063546_66065128_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66063546 - 66065128
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
ATCCCCTGAGTG
Flanking Amino Acid:
SGNIGEGYRDTSLLCKSAIH
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
84.1
0.77
0.8
81
31
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
47.6
-0.3
1.7
52.33
42.4

Associated Gene:

Gene:
DCBLD1
Ensembl Gene ID:
ENSAPLG00000001269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001345
66047052 - 66081503
34452