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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66065202_66065930_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66065202 - 66065930
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTCTTTTACT
Flanking Amino Acid:
RANHYTKTEYSRYCPAGCRD
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.3
0.82
0.7
81.1
29.5
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
74.5
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
DCBLD1
Ensembl Gene ID:
ENSAPLG00000001269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001345
66047052 - 66081503
34452