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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66066653_66077005_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66066653 - 66077005
Intron Length:
10353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCATCTAAACT
Flanking Amino Acid:
LSILSSSTVHGPYCGNMMPV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.1
34.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.5
0.57
0.9
69.8
36.6
Minor 5ss
34.1
-1.8
2.9
38.7
41.6
Minor BPS
56.3
0.28
1.8
71.55
45.6

Associated Gene:

Gene:
DCBLD1
Ensembl Gene ID:
ENSAPLG00000001269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001345
66047052 - 66081503
34452