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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66110103_66111888_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66110103 - 66111888
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTCTCGTAAAAA
Flanking Amino Acid:
NCQNLCTSNLEGELGIANLC
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
82.8
0.74
0.7
77.5
30.6
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
48.6
-0.1
2.4
68.09
44.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706