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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66113152_66116676_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
66113152 - 66116676
Intron Length:
3525

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGT|GCAACTCAG
5'SS Class:
weak_major
3'SS Sequence:
AAAATGTCCCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTTCTACAAGA
Flanking Amino Acid:
TQGCQFWNATVVSMYLKCMH
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.06
1.5
49.3
46.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
44.7
-0.3
1.7
39.8
43.7
Minor 5ss
30.8
-2.2
3.9
41.5
45
Minor BPS
48.3
-0.1
2
66.95
39.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706