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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66121191_66121872_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66121191 - 66121872
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TGATTTACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTCTCTTTGATT
Flanking Amino Acid:
FYSTFPNSTYRFSIVAVNEA
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
84
0.85
0.9
75
39.9
Major PPT
68.1
0.41
0.9
62.8
38.2
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
70.9
0.74
1.2
79.21
37.5

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706