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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66121950_66124273_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66121950 - 66124273
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGAG
5'SS Class:
major
3'SS Sequence:
TATTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTAATTAATT
Flanking Amino Acid:
EANITTPESKVKEKAKWLFL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.4
41.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
26.8
-2.7
3.7
36.9
47.7
Minor BPS
61.2
0.43
1.8
78.37
37.2

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706