About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66126497_66127677_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66126497 - 66127677
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGCTC
5'SS Class:
major
3'SS Sequence:
TCTCATTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTCTTCTCATTC
Flanking Amino Acid:
QRIYFVMNEKIHVCHLENCT
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.6
44.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.2
0.61
0.8
69.1
36.7
Minor 5ss
34
-1.8
3.7
50.1
46.5
Minor BPS
48.1
-0.1
1.8
57.34
42.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706