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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66128817_66129421_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66128817 - 66129421
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTGCATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTGCAATAACA
Flanking Amino Acid:
WRSPEHTIGTSPSAWQNWTY
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.2
31.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75
0.56
0.9
68.6
37
Minor 5ss
42.3
-0.8
2.7
52.3
39.5
Minor BPS
52.5
0.07
2
69.46
42.6

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706