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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66131714_66132673_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66131714 - 66132673
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
CTGTTGTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TGGTGCTAAAAG
Flanking Amino Acid:
CLYWAGKANTIYRKSLLGGH
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
57.8
43.7
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
69.5
0.44
0.9
61.8
40
Minor 5ss
35.2
-1.7
3.5
46.2
49.1
Minor BPS
45.8
-0.4
2.2
53.08
47.3

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706