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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66132866_66137576_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66132866 - 66137576
Intron Length:
4711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
GCTGTTTGAACT
Flanking Amino Acid:
QEQLQFSGKQVVGLALDVSH
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.5
32.7
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
41.8
-0.9
3.2
58.1
46.5
Minor BPS
54.4
0.22
1.6
68.54
42.7

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706