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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66137678_66139269_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66137678 - 66139269
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATATAT
Flanking Amino Acid:
NLYRISLCKEGCGNVIVTEF
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.5
0.71
0.9
76.1
37.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
49.9
0.07
2
74.88
41.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706