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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66139485_66139810_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66139485 - 66139810
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTAT
5'SS Class:
major
3'SS Sequence:
CCATTATGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTTATTATTT
Flanking Amino Acid:
LVHTSLKPLPGNFSFTPKVI
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.5
33.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
60.9
0.25
1.1
56.9
42.3
Minor 5ss
40.1
-1.1
3.2
57.9
46.7
Minor BPS
55.7
0.26
1.8
76.33
40.8

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706