About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66140719_66141546_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66140719 - 66141546
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTAAATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
TSVYLRAPEGVPSAPTNPRI
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
75.7
37.3
Minor 5ss
34.2
-1.8
3.6
47
48.4
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706