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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66142730_66143365_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66142730 - 66143365
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTTGGTGTAAAT
Flanking Amino Acid:
LSDIVQRNSSDLFPVPTLIT
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.6
43
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
34.8
-1.7
3.4
47.9
47.8
Minor BPS
45.5
-0.2
2.5
72.3
45

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706