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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66144533_66145100_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66144533 - 66145100
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTGATA
Flanking Amino Acid:
VSSLLSYPLLSRLYWMEELD
Intron Amino Acid Position:
1287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.65
0.9
76.7
37.2
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
68.3
0.57
1.4
78.88
30.8

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706