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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66149604_66154012_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66149604 - 66154012
Intron Length:
4409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGATATTTAAAG
Flanking Amino Acid:
KETIGTTLYGVPEAVDSIKA
Intron Amino Acid Position:
1563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
54.8
0.01
1.7
59.64
41.5

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706