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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66154246_66156134_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66154246 - 66156134
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
CTTTCCTTACTA
Flanking Amino Acid:
LQSGTNNLFKVLAFHPNENW
Intron Amino Acid Position:
1641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
62.9
37.1
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
76.2
0.59
0.8
70.7
34.7
Minor 5ss
36.7
-1.5
3.1
47.2
48.2
Minor BPS
71.6
0.67
1.6
78.78
38.5

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706