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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66157535_66158018_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66157535 - 66158018
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
GTTTGGTCAAAG
Flanking Amino Acid:
TSSSTIFKTTAGVPSKPGTP
Intron Amino Acid Position:
1759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
63.1
0.29
1.2
62.7
42.4
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
41.4
-0.7
2.5
53.72
46.6

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706