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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66161175_66161783_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66161175 - 66161783
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TTCTATTTAACA
Flanking Amino Acid:
DTSKDIVLSKDTVTYPDIID
Intron Amino Acid Position:
1861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
66.4
0.41
1
59
37.6
Major PPT
80.5
0.69
0.9
76.9
35.7
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
73.3
0.73
1.4
80.03
36.1

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706