About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66161874_66162542_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66161874 - 66162542
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TCAGAGTGAAAT
Flanking Amino Acid:
GLCMVMLFGFVWYQRRKSTK
Intron Amino Acid Position:
1891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
63.6
41.3
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
39.6
-1.2
3.1
52.4
44.9
Minor BPS
39.7
-0.7
2.3
55.92
45.5

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706