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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66162679_66163098_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66162679 - 66163098
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TAAGTATTAACA
Flanking Amino Acid:
VGLANACYAVSILPSQAEID
Intron Amino Acid Position:
1936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
77.8
0.63
0.9
72.8
37.5
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
56.9
0.21
1.7
66.38
39.6

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706