About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66163262_66163536_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66163262 - 66163536
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTTTTGTTGAGT
Flanking Amino Acid:
GSGETKVAVKTLKKGATDQE
Intron Amino Acid Position:
1991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
72.2
0.5
1
70.7
39.9
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
54.2
0.21
2.3
82.19
39.8

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706