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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66163602_66166176_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66163602 - 66166176
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATACATAATC
Flanking Amino Acid:
SEFLKEAHLMSKFDHPHILK
Intron Amino Acid Position:
2012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.7
81
24.2
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
54
0.11
1.8
65.31
40.1

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706