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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66166307_66167392_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66166307 - 66167392
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGACAT
U12 Branch Point Sequence:
ACATGGGTAACT
Flanking Amino Acid:
GYLRGARKQKLQSSLLTVTD
Intron Amino Acid Position:
2056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
51
0.03
1.1
58.7
38.1
Major PPT
87.8
0.85
0.7
84.9
29.9
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
41.1
-0.5
2.8
62.51
47.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706