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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66169530_66174604_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66169530 - 66174604
Intron Length:
5075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACA
Flanking Amino Acid:
LESPSNCPDDLCDLITRCWA
Intron Amino Acid Position:
2201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
73.6
33.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
42.4
-0.8
2.9
59
45.5
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706