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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66174769_66182374_F

Intron Information:

Intron Rank:
43
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
66174769 - 66182374
Intron Length:
7606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAGCTGGTGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
AGATACTTAGCT
Flanking Amino Acid:
ATGIINQAFEGSDVPPFSIH
Intron Amino Acid Position:
2256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
49.4
-0
1.2
52.3
45.9
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
57.9
0.33
1.8
73.84
42.1

Associated Gene:

Gene:
ROS1
Ensembl Gene ID:
ENSAPLG00000002159
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002286
66109980 - 66185685
75706