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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66200942_66201913_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66200942 - 66201913
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TCTTGGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CACTTTGTAACA
Flanking Amino Acid:
AQSLGLNVDPARRYSFCGGS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.5
0.73
0.9
76.3
37.7
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
49
-0
2
58.95
41.6

Associated Gene:

Gene:
VGLL2
Ensembl Gene ID:
ENSAPLG00000027398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043125
66200901 - 66205790
4890