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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66201104_66201913_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66201104 - 66201913
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
TCTCCATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTCTCTCCATT
Flanking Amino Acid:
AQSLGLNVDPGLQPQDKSKD
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.3
0.66
0.8
76.8
30.6
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
47.8
-0
2
68.82
42.7

Associated Gene:

Gene:
VGLL2
Ensembl Gene ID:
ENSAPLG00000027398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018616
66201060 - 66205790
4731