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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6623578_6624492_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6623578 - 6624492
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ACACTCTGAATG
Flanking Amino Acid:
DKEILTSRVIDRSIRPLFPV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
48.9
-0.2
1.5
48.66
38.9

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369
ENSAPLT00000045396
6621414 - 6637214
15801