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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6624543_6625003_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6624543 - 6625003
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTCTTTTATCT
Flanking Amino Acid:
FPVGYFYDTQILCNLLAVDG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
72.7
44.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
72.7
0.51
1
66.6
43.6
Minor 5ss
34.5
-1.8
3.3
50
46.3
Minor BPS
61.1
0.43
1.6
77.62
38.8

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369
ENSAPLT00000045396
6621414 - 6637214
15801