About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6625068_6625145_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6625068 - 6625145
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCAATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TATATCTCAATT
Flanking Amino Acid:
NDPDILAINGASAALALSDI
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
69.4
0.44
0.9
60.1
40
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
62.9
0.48
1.5
78.07
38.1

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369