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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6625194_6625776_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6625194 - 6625776
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
AGTTTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTATTATAATA
Flanking Amino Acid:
LSDIPWNGPIGAVRVGLIDG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75
0.56
0.9
66.3
44.6
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
52.5
0.07
1.6
63.99
36.9

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002982
6617846 - 6637214
19369
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921