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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6625891_6626150_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6625891 - 6626150
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAGTAATTAATC
Flanking Amino Acid:
VVAGAPQNQVVMLEATAENI
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.7
0.51
0.9
70.2
35.3
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
55.8
0.16
1.8
66.01
39.3

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369