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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6626330_6627161_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6626330 - 6627161
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCAAAGAAG
5'SS Class:
weak_major
3'SS Sequence:
TCCTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
GTAGAGTTAACT
Flanking Amino Acid:
FVAPEEIVECISRDEAINKI
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.4
53.1
43.9
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
77.1
0.61
0.8
69.1
37
Minor 5ss
22.6
-3.2
4
30.7
43
Minor BPS
48.6
-0
2.3
70.67
45.6

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002982
6617846 - 6637214
19369
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921