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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6627468_6627565_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6627468 - 6627565
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTAACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTTCATAATT
Flanking Amino Acid:
FRNLILNEYRRCDGRDLTSL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.2
0.45
0.8
67.2
32.8
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
64.4
0.53
1.6
78.77
37.1

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369