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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6627691_6628720_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6627691 - 6628720
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTCTAAAT
5'SS Class:
weak_major
3'SS Sequence:
TTTAACAGTGGAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
QTQVVLLNYLIKDKNFMLHY
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.2
59.5
39
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
49.1
-0
1.8
55.5
44.1
Minor 5ss
32.2
-2
3.1
42.1
38.5
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002982
6617846 - 6637214
19369