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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6629751_6630410_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6629751 - 6630410
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTATGG
5'SS Class:
weak_major
3'SS Sequence:
TCTAACTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TATATTCTAACT
Flanking Amino Acid:
RVTSEVLESNGSSSMASACG
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.1
50.6
40.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
72.7
0.51
0.9
66.4
35.2
Minor 5ss
43.6
-0.7
2.8
53.5
45.5
Minor BPS
59.5
0.38
1.7
78.33
37.6

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369