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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6630676_6631337_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6630676 - 6631337
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATGTACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
GTTACTCCAATT
Flanking Amino Acid:
EDYRLLTDILGIEDYYGDMD
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
64.1
0.32
1.1
58
42
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
48.7
-0
1.9
70.71
40.2

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369