Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66312116_66313282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

66312116 - 66313282

Intron Length:

1167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTTTTCCCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

GTGATTATAACC

Flanking Amino Acid:

PPSIVCRTPMPSNMQTTSSS

Intron Amino Acid Position:

851

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.3

38.6

Major BPS

77.9

0.69

78.3

31.3

Major PPT

85.9

0.81

0.7

24.3

Minor 5ss

40.3

-1.1

2.8

46.9

41.8

Minor BPS

49.8

-0

1.6

60.26

38.8

Associated Gene:

Gene:

RFX6

Ensembl Gene ID:

ENSAPLG00000002929

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036876

66311311 - 66347855

36545

ENSAPLT00000002959

66311311 - 66347855

36545