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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66315025_66315553_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66315025 - 66315553
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATTC
Flanking Amino Acid:
TGDSENMQLTGQMELSESTG
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86
0.81
0.8
78.2
39.9
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
53.5
0.09
1.8
67.82
37.9

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036876
66311311 - 66347855
36545
ENSAPLT00000002959
66311311 - 66347855
36545