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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66315764_66317152_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66315764 - 66317152
Intron Length:
1389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTACTC
Flanking Amino Acid:
NLLDKYMKNLDASKATFTAS
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.2
0.72
0.8
73.2
37.1
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
58.6
0.25
1.8
72.87
38.1

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036876
66311311 - 66347855
36545
ENSAPLT00000002959
66311311 - 66347855
36545