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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66328314_66333198_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66328314 - 66333198
Intron Length:
4885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AAGTACTTAAAT
Flanking Amino Acid:
RFSGSKLKNEGGFTRKYSLS
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
78
0.63
0.9
74.1
34.9
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
62.4
0.47
1.6
74.47
41.4

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002959
66311311 - 66347855
36545