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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66333227_66336652_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66333227 - 66336652
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATTT
Flanking Amino Acid:
HSVYSGKGLTRFSGSKLKNE
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.4
0.59
1
78.2
33.9
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
58.5
0.35
1.7
77.58
39.2

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036876
66311311 - 66347855
36545
ENSAPLT00000002959
66311311 - 66347855
36545