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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66336731_66343997_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66336731 - 66343997
Intron Length:
7267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCCCTTCCACA
Flanking Amino Acid:
TRRLGTRGHSKYHYYGIGIK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.5
0.69
0.7
75.6
26.6
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
48.8
-0.1
2
64.68
42

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002959
66311311 - 66347855
36545
ENSAPLT00000036876
66311311 - 66347855
36545